Basic Information
Locus ID:
CH08.2443
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UBP2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 34757473 | 34762261 | - | CH08.2443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 85,482.33 Da | 51.71 | 78.88 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02257 | Peptidase_C19 | 270 | 345 | 4.05436E-7 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 230 | 760 | 2.1E-32 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 100 | 156 | 1.7E-6 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 157 | 4.12E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 211 | 762 | 6.48E-50 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 501 | 765 | 2.0E-31 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 170 | 8.5E-13 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 210 | 379 | 2.5E-10 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 193 | 763 | 25.383013 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 77 | 158 | 12.006107 | IPR001607 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 693 | 712 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 538 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 6.78E-21 |
| RefSeq | XP_034600573.1 | ubiquitin carboxyl-terminal hydrolase 1-like [Setaria viridis] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 6.73E-20 | |
| TrEMBL | A0A368RPJ6 | Ubiquitin carboxyl-terminal hydrolase OS=Setaria italica OX=4555 GN=SETIT_6G220300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology