Basic Information
Locus ID:
CH08.2422
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ras family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 34466878 | 34472081 | - | CH08.2422 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 72,271.97 Da | 44.90 | 76.83 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01868 | Rab11_like | 11 | 175 | 9.25376E-110 | - |
| CDD | cd09612 | Jacalin | 413 | 532 | 6.89325E-41 | IPR033734 |
| Pfam | PF00071 | Ras family | 15 | 175 | 3.3E-59 | IPR001806 |
| Pfam | PF01419 | Jacalin-like lectin domain | 407 | 532 | 2.8E-18 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 391 | 531 | 1.83E-34 | IPR036404 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 10 | 183 | 8.09E-56 | IPR027417 |
| Gene3D | G3DSA:2.100.10.30 | - | 389 | 538 | 6.6E-40 | IPR036404 |
| Gene3D | G3DSA:3.40.50.300 | - | 5 | 214 | 7.0E-67 | IPR027417 |
| SMART | SM00175 | rab_sub_5 | 14 | 177 | 5.9E-105 | - |
| SMART | SM00176 | ran_sub_2 | 19 | 221 | 7.5E-5 | - |
| SMART | SM00174 | rho_sub_3 | 16 | 177 | 5.3E-12 | IPR001806 |
| SMART | SM00173 | ras_sub_4 | 11 | 177 | 9.7E-26 | - |
| SMART | SM00915 | Jacalin_2 | 404 | 533 | 2.2E-21 | IPR001229 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 12 | 170 | 2.9E-34 | IPR005225 |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 9 | 225 | 34.069572 | - |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 8 | 231 | 16.332287 | IPR001806 |
| ProSiteProfiles | PS51420 | small GTPase Rho family profile. | 7 | 183 | 10.069969 | - |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 391 | 533 | 34.504017 | IPR001229 |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 14 | 35 | 1.3E-37 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 117 | 130 | 1.3E-37 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 37 | 53 | 1.3E-37 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 55 | 77 | 1.3E-37 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 152 | 174 | 1.3E-37 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43130.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. encodes a protein belonging to the Rab/Ypt family of small GTPases, which are implicated in intracellular vesicular traffic. | 8.29E-106 |
| RefSeq | XP_025819930.1 | ras-related protein RABA5c-like [Panicum hallii] | 1.18E-126 |
| P28187 | Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1 | 7.96E-105 | |
| TrEMBL | B8B8V3 | Jacalin-type lectin domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29960 PE=4 SV=1 | 1.57E-179 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology