Basic Information
Locus ID:
CH08.2411
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein of unknown function (DUF 659)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 34272746 | 34274329 | + | CH08.2411 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 50,958.70 Da | 45.51 | 64.27 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 207 | 274 | 7.9E-9 | IPR008906 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 9 | 276 | 6.37E-32 | IPR012337 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 382 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22220.1 | hAT transposon superfamily. | 3.45E-19 |
| RefSeq | XP_044961704.1 | uncharacterized protein LOC123412822 [Hordeum vulgare subsp. vulgare] | 7.43E-109 |
| TrEMBL | A0A453S075 | DUF659 domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 1.25E-107 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | BH01.4753, BH06.686, BH08.2468, BH08.2472, CH05.2087 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0056120, gene-QOZ80_4BG0351070 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_048311, gene-QYE76_055843 |
| Poaceae | Paspalum vaginatum | 15 | gene-BS78_03G023900, gene-BS78_03G199100, gene-BS78_K224500 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr03G013220, Chr03G013230, Chr03G013240, Chr05G004880 ... |