Basic Information
Locus ID:
CH08.2406
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 34212917 | 34216436 | - | CH08.2406 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 59,919.83 Da | 46.29 | 85.74 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 215 | 332 | 3.12608E-20 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 75 | 105 | 1.0E-4 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 378 | 483 | 1.6E-22 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 57 | 180 | 3.11E-11 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 378 | 487 | 5.65E-27 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 217 | 336 | 3.6E-19 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 367 | 489 | 1.2E-30 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 44 | 208 | 2.5E-15 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 213 | 336 | 4.8E-16 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 490 | 552 | 5.1E-12 | - |
| SMART | SM00225 | BTB_4 | 73 | 181 | 1.4 | IPR000210 |
| SMART | SM00225 | BTB_4 | 379 | 489 | 5.5E-24 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 73 | 102 | 9.35131 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 208 | 331 | 9.958586 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 379 | 446 | 18.740938 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 7.08E-56 |
| RefSeq | XP_034601350.1 | BTB/POZ and MATH domain-containing protein 1-like [Setaria viridis] | 5.16E-129 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 6.87E-55 | |
| TrEMBL | A0A4V6D5R0 | BTB domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_6G222500v2 PE=4 SV=1 | 1.48E-130 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology