Basic Information
Locus ID:
CH08.2362
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 33796089 | 33800394 | + | CH08.2362 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 48,313.21 Da | 47.72 | 68.34 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 279 | 353 | 7.58239E-32 | - |
| CDD | cd12619 | RRM2_PUB1 | 156 | 230 | 9.47021E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 72 | 142 | 6.41575E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 72 | 138 | 1.1E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 157 | 227 | 1.5E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 281 | 347 | 3.9E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 68 | 236 | 3.94E-44 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 271 | 360 | 3.66E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 254 | 357 | 1.1E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 5 | 154 | 7.6E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 155 | 241 | 1.3E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 156 | 229 | 1.6E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 71 | 140 | 4.6E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 280 | 349 | 4.5E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 70 | 144 | 15.425642 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 155 | 233 | 16.773018 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 279 | 353 | 15.76675 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 276 | - | - |
| Coils | Coil | Coil | 8 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 1.57E-162 |
| RefSeq | XP_025820398.1 | oligouridylate-binding protein 1B-like [Panicum hallii] | 2.61E-284 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 8.29E-270 | |
| TrEMBL | A0A3L6Q334 | Oligouridylate-binding protein 1B-like OS=Panicum miliaceum OX=4540 GN=C2845_PM15G17960 PE=4 SV=1 | 5.91E-283 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology