Basic Information
Locus ID:
CH08.2272
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 33063222 | 33067725 | + | CH08.2272 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 82,775.97 Da | 40.39 | 90.76 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 55 | 353 | 7.23014E-178 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 370 | 672 | 2.47305E-153 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 375 | 668 | 6.5E-33 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 54 | 353 | 1.54E-45 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 369 | 673 | 2.49E-48 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 368 | 673 | 3.4E-47 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 54 | 354 | 5.0E-37 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 55 | 354 | 29.952677 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 370 | 673 | 31.040771 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 735 | 749 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 2.62E-226 |
| RefSeq | XP_034599849.1 | glycerophosphodiester phosphodiesterase GDPDL3-like isoform X2 [Setaria viridis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 2.52E-225 | |
| TrEMBL | A0A4U6U9Q7 | glycerophosphodiester phosphodiesterase OS=Setaria viridis OX=4556 GN=SEVIR_6G209900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology