Basic Information
Locus ID:
CH08.221
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 2293051 | 2299887 | - | CH08.221 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.59 | 89,736.76 Da | 80.50 | 84.94 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 738 | 806 | 6.9E-23 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 668 | 730 | 2.7E-16 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 594 | 653 | 2.7E-12 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 656 | 729 | 7.83E-17 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 580 | 656 | 8.91E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 732 | 808 | 1.7E-25 | IPR029071 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 492 | 529 | 7.9E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 655 | 732 | 2.0E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 733 | 811 | 2.4E-31 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 586 | 654 | 1.4E-16 | - |
| SMART | SM00213 | ubq_7 | 736 | 807 | 7.7E-25 | IPR000626 |
| SMART | SM00213 | ubq_7 | 659 | 729 | 4.1E-12 | IPR000626 |
| SMART | SM00213 | ubq_7 | 592 | 656 | 1.3E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 657 | 728 | 15.165776 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 736 | 806 | 22.025026 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 592 | 653 | 12.226097 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 788 | 809 | 6.8E-21 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 746 | 766 | 6.8E-21 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 767 | 787 | 6.8E-21 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 227 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 7.0E-65 |
| RefSeq | XP_034599218.1 | polyubiquitin-like [Setaria viridis] | 1.47E-97 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 6.74E-64 | |
| TrEMBL | A0A4V6D571 | Ubiquitin-like domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_6G079200v2 PE=4 SV=1 | 3.33E-96 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH08.221.