Basic Information
Locus ID:
CH08.2208
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 32593663 | 32594916 | + | CH08.2208 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 46,112.94 Da | 38.00 | 77.12 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 233 | 307 | 1.1E-5 | IPR013187 |
| Pfam | PF00646 | F-box domain | 23 | 59 | 5.4E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 59 | 5.23E-9 | IPR036047 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 133 | 407 | 8.24E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 64 | 1.9E-6 | - |
| SMART | SM00256 | fbox_2 | 25 | 65 | 7.0E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 114 | 335 | 3.1E-25 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 1.98E-10 |
| RefSeq | XP_004974816.1 | F-box protein At3g07870 [Setaria italica] | 2.53E-187 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 1.96E-9 | |
| TrEMBL | K3YLH9 | F-box domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 6.84E-186 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology