Basic Information
Locus ID:
CH08.2207
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 32587914 | 32592382 | + | CH08.2207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 88,847.98 Da | 41.29 | 79.14 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 638 | 732 | 8.3E-6 | IPR013187 |
| Pfam | PF00646 | F-box domain | 6 | 42 | 3.7E-9 | IPR001810 |
| Pfam | PF00646 | F-box domain | 440 | 465 | 0.003 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 43 | 1.57E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 440 | 466 | 9.81E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 43 | 3.3E-8 | - |
| SMART | SM00256 | fbox_2 | 8 | 48 | 2.4E-9 | IPR001810 |
| SMART | SM00256 | fbox_2 | 440 | 472 | 59.0 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 520 | 739 | 7.9E-26 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2 | 52 | 9.364997 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004974816.1 | F-box protein At3g07870 [Setaria italica] | 3.02E-205 |
| TrEMBL | K3YLH9 | F-box domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 4.09E-204 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology