Basic Information
Locus ID:
CH08.2206
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 32586418 | 32587611 | - | CH08.2206 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 42,734.29 Da | 34.91 | 79.85 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 230 | 328 | 2.2E-4 | IPR013187 |
| Pfam | PF00646 | F-box domain | 20 | 55 | 1.1E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 56 | 1.96E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 60 | 7.0E-8 | - |
| SMART | SM00256 | fbox_2 | 22 | 62 | 2.6E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 111 | 335 | 3.9E-25 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004974816.1 | F-box protein At3g07870 [Setaria italica] | 2.18E-197 |
| TrEMBL | K3YLH9 | F-box domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 5.91E-196 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology