Basic Information
Locus ID:
CH08.2190
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 32451736 | 32454252 | + | CH08.2190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 54,520.11 Da | 50.85 | 74.36 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 4 | 41 | 6.8E-5 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 105 | 236 | 9.29E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 40 | 1.96E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 43 | 8.7E-6 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 94 | 322 | 1.3E-20 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 263 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004974816.1 | F-box protein At3g07870 [Setaria italica] | 2.94E-57 |
| TrEMBL | A0A835FGJ5 | F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_012297 PE=4 SV=1 | 4.2E-112 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology