Basic Information
Locus ID:
CH08.2188
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 32441565 | 32445520 | + | CH08.2188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 82,954.93 Da | 42.78 | 77.31 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 7 | 41 | 5.8E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 42 | 8.9E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 47 | 3.3E-7 | - |
| SMART | SM00256 | fbox_2 | 8 | 48 | 2.6E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 483 | 684 | 9.6E-18 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 104 | 325 | 3.3E-13 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 402 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022683517.1 | F-box protein At3g07870-like [Setaria italica] | 1.81E-164 |
| TrEMBL | K3YLJ6 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G193900v2 PE=4 SV=1 | 4.1E-163 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology