Basic Information
Locus ID:
CH08.2185
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 32424297 | 32424800 | - | CH08.2185 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 17,833.39 Da | 56.65 | 89.52 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 100 | 142 | 1.12478E-15 | - |
| Pfam | PF13639 | Ring finger domain | 99 | 142 | 4.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 99 | 148 | 1.86E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 156 | 2.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 100 | 141 | 6.9E-7 | IPR001841 |
| SMART | SM00744 | ringv_2 | 99 | 142 | 4.4E-4 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 100 | 142 | 13.448223 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04240.1 | RING/U-box superfamily protein. Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. | 8.58E-25 |
| RefSeq | XP_034599731.1 | probable E3 ubiquitin-protein ligase XERICO [Setaria viridis] | 4.78E-96 |
| Q9SI09 | Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1 | 8.32E-24 | |
| TrEMBL | A0A4U6U5T6 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_6G200900v2 PE=4 SV=1 | 1.08E-94 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology