halophFGD

Basic Information

Locus ID: CH08.2140

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Protein kinase domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH08	32038411	32038836	-	CH08.2140

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.53	15,349.19 Da	36.53	73.33	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13947	Wall-associated receptor kinase galacturonan-binding	26	81	3.1E-8	IPR025287

Gene Ontology

Molecular Function:

GO:0030247 (polysaccharide binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G31100.1	wall-associated kinase, putative.	4.25E-8
RefSeq	XP_002444842.2	putative wall-associated receptor kinase-like 16 [Sorghum bicolor]	1.68E-63
Swiss-Prot	Q9M092	Wall-associated receptor kinase-like 17 OS=Arabidopsis thaliana OX=3702 GN=WAKL17 PE=3 SV=2	4.22E-7
TrEMBL	A0A1E5UMI3	Wall-associated receptor kinase 5 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0024989 PE=4 SV=1	6.24E-74

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	1	CH08.2140
Poaceae	Sporobolus alterniflorus	2	Chr20G003720, Chr29G003470