Basic Information
Locus ID:
CH08.213
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 2202910 | 2203185 | + | CH08.213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 9,478.87 Da | 56.47 | 83.63 | 0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 11 | 41 | 4.4E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 57 | 1.45E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 73 | 7.7E-7 | IPR013083 |
| SMART | SM00184 | ring_2 | 11 | 51 | 4.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 11 | 51 | 10.202563 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37890.2 | Zinc finger (C3HC4-type RING finger) family protein. | 2.74E-10 |
| RefSeq | XP_018484020.1 | PREDICTED: uncharacterized protein LOC108854853 [Raphanus sativus] | 5.27E-9 |
| F4JSV3 | Probable E3 ubiquitin-protein ligase EDA40 OS=Arabidopsis thaliana OX=3702 GN=EDA40 PE=2 SV=1 | 1.78E-8 | |
| TrEMBL | A0A6J0NHI5 | uncharacterized protein LOC108854853 OS=Raphanus sativus OX=3726 GN=LOC108854853 PE=4 SV=1 | 1.19E-7 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||