Basic Information
Locus ID:
CH08.1936
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Phosphatidylinositol-4-phosphate 5-Kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 29946278 | 29962234 | + | CH08.1936 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 198,288.94 Da | 51.66 | 74.86 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17300 | PIPKc_PIKfyve | 1497 | 1760 | 6.49509E-147 | IPR044769 |
| CDD | cd03334 | Fab1_TCP | 386 | 659 | 1.60931E-138 | - |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 407 | 655 | 2.9E-34 | IPR002423 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1536 | 1702 | 3.8E-33 | IPR002498 |
| Pfam | PF01363 | FYVE zinc finger | 54 | 119 | 2.0E-16 | IPR000306 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 453 | 625 | 1.05E-42 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1496 | 1760 | 1.05E-77 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 52 | 122 | 1.53E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.810.10 | - | 1620 | 1761 | 2.4E-41 | - |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 452 | 625 | 8.7E-55 | IPR027409 |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1479 | 1617 | 7.1E-35 | IPR027484 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 131 | 2.5E-20 | IPR013083 |
| SMART | SM00064 | fyve_4 | 49 | 122 | 1.5E-19 | IPR000306 |
| SMART | SM00330 | PIPK_2 | 1463 | 1761 | 1.9E-121 | IPR002498 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1434 | 1760 | 56.25568 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 57 | 121 | 12.934279 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1252 | 1270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1252 | 1284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 158 | - | - |
| Coils | Coil | Coil | 1231 | 1251 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_034601416.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like [Setaria viridis] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UJ62 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Setaria viridis OX=4556 GN=SEVIR_6G174500v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology