Basic Information
Locus ID:
CH08.1883
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 29385968 | 29388407 | + | CH08.1883 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 41,922.40 Da | 47.07 | 103.32 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 149 | 369 | 3.04E-69 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 232 | 373 | 3.7E-46 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 140 | 231 | 2.6E-24 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80780.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 1.35E-84 |
| RefSeq | XP_012702141.2 | probable CCR4-associated factor 1 homolog 6 [Setaria italica] | 1.2E-172 |
| Q9SAI2 | Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1 | 1.3E-83 | |
| TrEMBL | K3YI49 | poly(A)-specific ribonuclease OS=Setaria italica OX=4555 PE=3 SV=1 | 1.09E-169 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology