Basic Information
Locus ID:
CH08.1811
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 28441125 | 28449496 | + | CH08.1811 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.35 | 37,599.28 Da | 41.22 | 83.53 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09280 | XPC-binding domain | 227 | 282 | 1.5E-19 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 310 | 344 | 1.4E-10 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 4 | 45 | 1.5E-5 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 124 | 161 | 4.6E-11 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 223 | 289 | 1.83E-20 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 45 | 4.84E-9 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 297 | 351 | 4.62E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 121 | 169 | 1.4E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 217 | 282 | 6.1E-23 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 47 | 2.1E-11 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 117 | 166 | 6.5E-19 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 300 | 349 | 3.2E-20 | - |
| SMART | SM00165 | uba_6 | 124 | 163 | 0.052 | IPR015940 |
| SMART | SM00727 | CBM | 225 | 268 | 7.5E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 309 | 346 | 1.1E-7 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 44 | 351 | 1.7E-74 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 306 | 347 | 14.812021 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 45 | 9.112214 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 125 | 164 | 11.486622 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 253 | 275 | 2.1E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 320 | 334 | 2.1E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 335 | 350 | 2.1E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 303 | 319 | 2.1E-28 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 200 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 6.81E-93 |
| RefSeq | XP_025821555.1 | probable ubiquitin receptor RAD23 isoform X2 [Panicum hallii] | 7.91E-166 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 4.43E-126 | |
| TrEMBL | A0A1E5WMM7 | Ubiquitin receptor RAD23 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0000591 PE=3 SV=1 | 1.38E-166 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology