Basic Information
Locus ID:
CH08.1791
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 28218471 | 28232068 | + | CH08.1791 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.46 | 35,674.73 Da | 44.16 | 86.84 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 32 | 71 | 3.0E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 32 | 73 | 4.36E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 82 | 180 | 1.51E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 190 | 1.6E-13 | IPR032675 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 239 | 250 | - | IPR017900 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26000.1 | Ribonuclease inhibitor. | 4.75E-53 |
| RefSeq | XP_025820383.1 | F-box protein SKIP28-like [Panicum hallii] | 1.08E-214 |
| Q9LU91 | F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1 | 4.63E-52 | |
| TrEMBL | A0A2S3I2J8 | F-box domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_6G205400 PE=4 SV=1 | 2.45E-213 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology