Basic Information
Locus ID:
CH08.1788
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 28194632 | 28196693 | - | CH08.1788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 68,620.96 Da | 47.61 | 97.25 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 360 | 558 | 6.9E-23 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 127 | 185 | 1.1E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 39 | 74 | 2.7E-6 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 360 | 632 | 1.91E-42 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 221 | 9.72E-32 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 351 | 431 | 2.8E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 40 | 148 | 5.2E-22 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 433 | 653 | 5.6E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 149 | 239 | 1.7E-12 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 356 | 638 | 26.22353 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48480.1 | receptor-like kinase 1. Arabidopsis thaliana receptor-like protein kinase (RKL1) gene | 9.35E-104 |
| RefSeq | XP_039815224.1 | probable inactive receptor kinase RLK902 [Panicum virgatum] | 7.98E-282 |
| Q9LP77 | Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana OX=3702 GN=RKL1 PE=1 SV=1 | 9.06E-103 | |
| TrEMBL | A0A3L6RMT2 | Protein kinase domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G12890 PE=4 SV=1 | 1.18E-281 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology