Basic Information
Locus ID:
CH08.175
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UBP2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 1794690 | 1797616 | + | CH08.175 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 62,259.58 Da | 44.29 | 68.41 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02667 | Peptidase_C19K | 156 | 557 | 2.20196E-51 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 156 | 556 | 2.9E-33 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 135 | 1.06E-6 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 154 | 558 | 1.3E-61 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 154 | 561 | 4.0E-64 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 153 | 3.1E-6 | IPR013083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 155 | 559 | 35.010548 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 61 | 139 | 10.685829 | IPR001607 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 156 | 171 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 396 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39370.1 | ubiquitin-specific protease 27. Encodes a ubiquitin-specific protease. | 4.85E-13 |
| RefSeq | XP_039847200.1 | ubiquitin carboxyl-terminal hydrolase 2-like [Panicum virgatum] | 3.12E-219 |
| Q9FPS0 | Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana OX=3702 GN=UBP27 PE=2 SV=1 | 4.81E-12 | |
| TrEMBL | A0A8T0SIV8 | Ubiquitin carboxyl-terminal hydrolase OS=Panicum virgatum OX=38727 GN=PVAP13_5KG206500 PE=3 SV=1 | 7.06E-218 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology