Basic Information
Locus ID:
CH08.1603
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 26042388 | 26043601 | + | CH08.1603 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 36,190.25 Da | 45.44 | 90.84 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 270 | 313 | 6.67272E-8 | - |
| Pfam | PF13639 | Ring finger domain | 270 | 313 | 9.5E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 269 | 319 | 1.69E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 317 | 1.9E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 270 | 312 | 0.007 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 270 | 313 | 11.013978 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_014755621.1 | RING-H2 finger protein ATL8 [Brachypodium distachyon] | 9.01E-14 |
| TrEMBL | A0A3L6PR20 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM14G11040 PE=4 SV=1 | 2.51E-13 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH08.1320, CH08.1603 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g31720.1 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG025530 |
| Poaceae | Triticum aestivum | 1 | TraesCS2A02G198300.1 |