Basic Information
Locus ID:
CH08.1597
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 25970847 | 25973086 | - | CH08.1597 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.01 | 28,349.13 Da | 48.75 | 85.47 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 125 | 165 | 1.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 171 | 5.65E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 171 | 2.3E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 125 | 164 | 3.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 125 | 165 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 117 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015649283.1 | probable E3 ubiquitin-protein ligase ATL44 [Oryza sativa Japonica Group] | 1.24E-20 |
| TrEMBL | A0A3L6RI82 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G11860 PE=4 SV=1 | 1.44E-35 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||