Basic Information
Locus ID:
CH08.153
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 1564051 | 1584628 | - | CH08.153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 152,471.39 Da | 49.64 | 82.14 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00521 | DNA gyrase/topoisomerase IV, subunit A | 394 | 592 | 5.0E-31 | IPR002205 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 163 | 234 | 3.1E-8 | IPR020683 |
| SUPERFAMILY | SSF56719 | Type II DNA topoisomerase | 277 | 642 | 2.49E-40 | IPR013760 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 148 | 234 | 3.73E-17 | IPR036770 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 817 | 1129 | 7.66E-27 | IPR036322 |
| Gene3D | G3DSA:3.30.1360.40 | - | 452 | 542 | 1.5E-9 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 860 | 965 | 1.4E-14 | IPR015943 |
| Gene3D | G3DSA:3.40.50.670 | - | 269 | 343 | 4.8E-6 | IPR013759 |
| Gene3D | G3DSA:2.130.10.10 | - | 966 | 1136 | 1.2E-8 | IPR015943 |
| Gene3D | G3DSA:1.25.40.20 | - | 137 | 265 | 4.1E-18 | IPR036770 |
| Gene3D | G3DSA:3.90.199.10 | Topoisomerase II, domain 5 | 362 | 451 | 3.6E-12 | IPR013758 |
| SMART | SM00320 | WD40_4 | 1004 | 1043 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1056 | 1090 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 961 | 999 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 908 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 913 | 954 | 0.21 | IPR001680 |
| SMART | SM00248 | ANK_2a | 224 | 264 | 2900.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 158 | 187 | 83.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 191 | 220 | 0.052 | IPR002110 |
| SMART | SM00434 | topIV4 | 359 | 659 | 3.6E-7 | IPR002205 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 191 | 217 | 9.33032 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 872 | 907 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 191 | 223 | 10.4992 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1130 | 1153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 681 | - | - |
| Coils | Coil | Coil | 611 | 631 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020113224.1 | DNA topoisomerase 2-like [Ananas comosus] | 7.18E-26 |
| Q9Y8G8 | DNA topoisomerase 2 OS=Penicillium chrysogenum OX=5076 GN=TOP2 PE=3 SV=1 | 4.99E-29 | |
| TrEMBL | A1CUL0 | DNA topoisomerase 2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=ACLA_087000 PE=3 SV=1 | 1.18E-28 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH08.153.