halophFGD

Basic Information

Locus ID: CH08.1516

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH08	24818805	24820043	+	CH08.1516

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.83	46,594.89 Da	51.28	84.54	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	16	96	1.57E-11	IPR036047
SMART	SM00256	fbox_2	26	67	0.0057	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_034601600.1	uncharacterized protein LOC117862180 isoform X3 [Setaria viridis]	2.18E-257
TrEMBL	A0A1E5VLC6	F-box domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0013061 PE=4 SV=1	2.3E-258

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	20	AH02.2246, AH02.2248, AH05.3340, AH05.3346, AH05.3347 ... AH06.1300, BH02.2347, BH02.2350, BH05.3349, BH05.3350, BH05.3351, BH05.3434, CH02.2522, CH02.2525, CH02.2526, CH02.2527, CH05.3460, CH05.3461, CH05.3564, CH08.1516
Poaceae	Eleusine coracana subsp. coracana	18	gene-QOZ80_1AG0020900, gene-QOZ80_1AG0023560 ... gene-QOZ80_1AG0023570, gene-QOZ80_1BG0070690, gene-QOZ80_1BG0074080, gene-QOZ80_1BG0074090, gene-QOZ80_1BG0074100, gene-QOZ80_5AG0365790, gene-QOZ80_5AG0389100, gene-QOZ80_5BG0413600, gene-QOZ80_5BG0435880, gene-QOZ80_7AG0567930, gene-QOZ80_7BG0599330, gene-QOZ80_8AG0629450, gene-QOZ80_8AG0634690, gene-QOZ80_8BG0657690, gene-QOZ80_8BG0657700, gene-QOZ80_8BG0663660
Poaceae	Hordeum vulgare	12	HORVU.MOREX.r3.1HG0055060.1, HORVU.MOREX.r3.1HG0058320.2 ... HORVU.MOREX.r3.1HG0055150.1.CDS1, HORVU.MOREX.r3.1HG0055160.1.CDS1, HORVU.MOREX.r3.3HG0310240.1.CDS1, HORVU.MOREX.r3.5HG0485260.1.CDS1, HORVU.MOREX.r3.5HG0502080.1, HORVU.MOREX.r3.5HG0522060.1.CDS1, HORVU.MOREX.r3.6HG0565120.1, HORVU.MOREX.r3.6HG0565340.1.CDS1, HORVU.MOREX.r3.6HG0567020.1.CDS1, HORVU.MOREX.r3.7HG0635460.1.CDS1
Poaceae	Lolium multiflorum	20	gene-QYE76_001927, gene-QYE76_001928, gene-QYE76_012384 ... gene-QYE76_012387, gene-QYE76_012390, gene-QYE76_012417, gene-QYE76_012422, gene-QYE76_020647, gene-QYE76_028148, gene-QYE76_053642, gene-QYE76_053651, gene-QYE76_053653, gene-QYE76_053656, gene-QYE76_055607, gene-QYE76_057587, gene-QYE76_057613, gene-QYE76_058545, gene-QYE76_060211, gene-QYE76_060212, gene-QYE76_069599
Poaceae	Oryza coarctata	5	Oco01G014050, Oco02G014280, Oco02G014300, Oco03G006450 ... Oco04G006660
Poaceae	Oryza sativa	2	LOC_Os01g41950.1, LOC_Os01g41970.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G373100, gene-BS78_03G170300 ... gene-BS78_05G083500, gene-BS78_08G105400, gene-BS78_08G105600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0106360, Pt_Chr0601009, Pt_Chr0700515, Pt_Chr0700517
Poaceae	Sporobolus alterniflorus	16	Chr02G016050, Chr02G016060, Chr02G016080, Chr05G017780 ... Chr05G017790, Chr06G015330, Chr06G015340, Chr08G010690, Chr0G001820, Chr17G013060, Chr18G010770, Chr24G007590, Chr24G007600, Chr28G006960, Chr29G006530, Chr29G006550
Poaceae	Thinopyrum elongatum	16	Tel1E01G351900, Tel1E01G352200, Tel1E01G374400 ... Tel3E01G677900, Tel4E01G495400, Tel4E01G627500, Tel5E01G377400, Tel5E01G543300, Tel5E01G543400, Tel5E01G543700, Tel5E01G716300, Tel6E01G152100, Tel6E01G284400, Tel6E01G285000, Tel6E01G294800, Tel7E01G742800
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG033420, gene_TRIDC1BG038760 ... gene_TRIDC2BG004830, gene_TRIDC4AG001240, gene_TRIDC4BG028860, gene_TRIDC5AG036820, gene_TRIDC5AG064990, gene_TRIDC5AG065000, gene_TRIDC6AG018170, gene_TRIDC6AG019180, gene_TRIDC6BG024040, gene_TRIDC6BG047890
Poaceae	Triticum aestivum	61	TraesCS1A02G204400.1, TraesCS1A02G204500.1 ... TraesCS1A02G221300.1, TraesCS1A02G381900.1.cds1, TraesCS1B02G218000.1, TraesCS1B02G218100.2, TraesCS1B02G218200.1, TraesCS1B02G234600.1, TraesCS1D02G207700.1, TraesCS1D02G207800.1.cds1, TraesCS1D02G207900.1.cds1, TraesCS1D02G222900.1, TraesCS1D02G389600.1.cds1, TraesCS1D02G447800.1, TraesCS2A02G039800.1.cds1, TraesCS2B02G052700.1.cds1, TraesCS2D02G038400.1.cds1, TraesCS3A02G115100.1.cds1, TraesCS3B02G042100.1.cds1, TraesCS3B02G463100.1.cds1, TraesCS3D02G421800.1.cds1, TraesCS4A02G009100.1, TraesCS4A02G484100.1.cds1, TraesCS4B02G388000.1.cds1, TraesCS4B02G389200.1.cds1, TraesCS4B02G389600.1, TraesCS5A02G232300.1.cds1, TraesCS5A02G341800.1, TraesCS5A02G453000.1.cds1, TraesCS5A02G553400.1.cds1, TraesCS5A02G553500.1, TraesCS5B02G230600.1, TraesCS5B02G340500.1, TraesCS5B02G341300.1, TraesCS5B02G462000.1, TraesCS5D02G235700.1, TraesCS5D02G346600.1, TraesCS5D02G346700.1, TraesCS5D02G363200.1, TraesCS5D02G463400.1.cds1, TraesCS5D02G463500.1.cds1, TraesCS5D02G463800.1.cds1, TraesCS6A02G134600.1.cds1, TraesCS6A02G134900.1.cds1, TraesCS6A02G140400.1.cds1, TraesCS6A02G421400.2, TraesCS6B02G163000.1.cds1, TraesCS6B02G168900.1.cds1, TraesCS6B02G445700.1, TraesCS6D02G123800.1.cds1, TraesCS6D02G124100.1.cds1, TraesCS6D02G128500.2.cds1, TraesCS6D02G403600.1, TraesCS7D02G078200.1.cds1, TraesCS7D02G078300.1, TraesCSU02G072300.1.cds1, TraesCSU02G123900.1.cds1, TraesCSU02G124000.1.cds1, TraesCSU02G124100.1.cds1, TraesCSU02G198400.1, TraesCSU02G221300.1
Poaceae	Zea mays	2	Zm00001eb042100_P001, Zm00001eb161470_P001
Poaceae	Zoysia japonica	3	nbis-gene-12552, nbis-gene-38416, nbis-gene-990
Poaceae	Zoysia macrostachya	3	Zma_g25778, Zma_g5174, Zma_g6460