Basic Information
Locus ID:
CH08.1487
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 24248323 | 24252198 | + | CH08.1487 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 35,805.79 Da | 50.86 | 91.88 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 58 | 109 | 2.96461E-21 | - |
| Pfam | PF12906 | RING-variant domain | 58 | 108 | 8.1E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 113 | 9.36E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 122 | 1.4E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 57 | 109 | 2.2E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 50 | 115 | 22.250887 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 8.71E-162 |
| RefSeq | XP_004973343.1 | probable E3 ubiquitin ligase SUD1 [Setaria italica] | 1.27E-223 |
| TrEMBL | K3YIP7 | RING-CH-type domain-containing protein OS=Setaria italica OX=4555 GN=101765316 PE=4 SV=1 | 2.87E-222 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology