Basic Information
Locus ID:
CH08.1422
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
RCE1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 22996062 | 22998147 | - | CH08.1422 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 21,970.03 Da | 34.69 | 79.90 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 44 | 178 | 4.46201E-41 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 44 | 179 | 9.9E-40 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 24 | 191 | 3.76E-50 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 36 | 194 | 4.1E-48 | IPR016135 |
| SMART | SM00212 | ubc_7 | 43 | 185 | 5.2E-39 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 40 | 185 | 39.62714 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 112 | 127 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36800.1 | RUB1 conjugating enzyme 1. RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1. | 1.1E-101 |
| RefSeq | XP_004973337.1 | NEDD8-conjugating enzyme Ubc12 [Setaria italica] | 2.44E-131 |
| Q9SDY5 | NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana OX=3702 GN=RCE1 PE=1 SV=1 | 1.05E-100 | |
| TrEMBL | K3YJC2 | UBC core domain-containing protein OS=Setaria italica OX=4555 PE=3 SV=1 | 3.23E-130 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22841 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21627 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010286, Ah029202 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24195, Sbi_jg8032 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12005 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010784 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66250, Sgl70567 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000013587, gene:ENSEOMG00000014161 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0014580, CQ.Regalona.r1.3AG0014590 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30113910, pistato.v30207390 |
| Apiaceae | Apium graveolens | 6 | Ag11G03110, Ag2G00293, Ag2G01142, Ag3G00181, Ag4G02768 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010860, COCNU_13G000420 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703800, gene-LOC103711578, gene-LOC120103752 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.495.V1.1, AsparagusV1_09.513.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G12450, Ftri18G28018, Ftri1G11152 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G18600.1, AT4G36800.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022872m.g.v1.0, Thhalv10027340m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g32100.v2.2, Sp7g34460.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g088210.2N, BniB03g013990.2N, BniB05g002020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0062 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0740, Cgl09G0074 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g04270, gene.Cymno11g10650 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0035s00037.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g05160, gene.Thate07g06570 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2276, evm.TU.LG08.99 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002417, Pov_00026760 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10831, Lb2G13422, Lb3G17237 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.3428, AH08.1447, CH04.405, CH08.1422 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0524430, gene-QOZ80_6BG0477960 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0473470.1, HORVU.MOREX.r3.6HG0541400.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004526, gene-QYE76_016909 |
| Poaceae | Oryza coarctata | 3 | Oco09G000670, Oco15G007170, Oco16G006960 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g28680.1, LOC_Os09g15320.2, LOC_Os10g11260.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_06G003800, gene-BS78_07G007600, gene-BS78_K326500 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203291, Pt_Chr0501832, Pt_Chr0501893 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr10G004690, Chr14G007790, Chr16G013380, Chr17G012680 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G309700, Tel6E01G056500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG029730, gene_TRIDC5BG031360 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G182800.1, TraesCS5B02G180900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb226900_P001, Zm00001eb272930_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31702, nbis-gene-52259 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22900, Zma_g23988, Zma_g31978 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.395, evm.TU.LG08.1829, evm.TU.LG09.1638 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g25790, gene.Posoc08g05220 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.255, evm.TU.Scaffold_6_RagTag.1977 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17155, nbisL1-mrna-351, nbisL1-mrna-517 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20790, nbisL1-mrna-21173 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11820, nbisL1-mrna-5990 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1199, evm.TU.utg000019l.1088 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00008249, Maker00012788 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15569, nbisL1-mrna-6492 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2322, nbisL1-mrna-3124 |
| Salicaceae | Populus euphratica | 2 | populus_peu23524, populus_peu36447 |
| Solanaceae | Lycium barbarum | 6 | gene-LOC132604120, gene-LOC132604951, gene-LOC132604953 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI002174400, SOLCI006501800, SOLCI006835600 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107005360, gene-LOC107010475, gene-LOC107018140 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11406_chr02_+, STRG.31603_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2282, TC10G0508 |
| Zosteraceae | Zostera marina | 1 | Zosma01g00440.v3.1 |