Basic Information
Locus ID:
CH08.1407
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 22561621 | 22562130 | + | CH08.1407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 19,014.04 Da | 66.33 | 70.47 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 94 | 136 | 1.10732E-17 | - |
| Pfam | PF13639 | Ring finger domain | 94 | 136 | 4.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 142 | 1.95E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 142 | 2.8E-20 | IPR013083 |
| SMART | SM00744 | ringv_2 | 94 | 136 | 0.0025 | IPR011016 |
| SMART | SM00184 | ring_2 | 95 | 135 | 3.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 95 | 136 | 13.123657 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 169 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54990.1 | RING/U-box superfamily protein. | 7.5E-10 |
| RefSeq | XP_039788247.1 | E3 ubiquitin-protein ligase RNF181-like [Panicum virgatum] | 1.66E-34 |
| Q9VHI7 | E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1 | 1.01E-10 | |
| TrEMBL | A0A8T0WNB0 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG019672 PE=4 SV=1 | 3.75E-33 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||