Basic Information
Locus ID:
CH08.1341
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Putative gypsy type transposon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 21610898 | 21613684 | - | CH08.1341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 69,344.80 Da | 55.21 | 68.60 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 472 | 492 | - | - |
| Coils | Coil | Coil | 519 | 539 | - | - |
| Coils | Coil | Coil | 551 | 571 | - | - |
| Coils | Coil | Coil | 593 | 613 | - | - |
| Coils | Coil | Coil | 351 | 371 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034570691.1 | uncharacterized protein LOC117835459 [Setaria viridis] | 7.92E-24 |
| TrEMBL | A0A3L6SUY0 | Retrotransposon protein, putative, Ty3-gypsy subclass OS=Panicum miliaceum OX=4540 GN=C2845_PM07G38070 PE=4 SV=1 | 1.8E-27 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||