halophFGD

Basic Information

Locus ID: CH08.1280

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Belongs to the histone deacetylase family. HD Type 1 subfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH08	20570392	20575745	-	CH08.1280

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.28	51,000.41 Da	44.12	74.08	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09991	HDAC_classI	27	332	0.0	-
Pfam	PF00850	Histone deacetylase domain	41	330	2.8E-85	IPR023801
SUPERFAMILY	SSF52768	Arginase/deacetylase	22	385	9.11E-124	IPR023696
Gene3D	G3DSA:3.40.800.20	Histone deacetylase domain	13	399	1.7E-135	IPR037138
PIRSF	PIRSF037913	HDAC_I_euk	10	457	8.1E-203	IPR003084
PRINTS	PR01270	Histone deacetylase superfamily signature	267	277	1.9E-24	IPR000286
PRINTS	PR01270	Histone deacetylase superfamily signature	182	197	1.9E-24	IPR000286
PRINTS	PR01271	Histone deacetylase signature	43	60	2.0E-58	IPR003084
PRINTS	PR01270	Histone deacetylase superfamily signature	150	173	1.9E-24	IPR000286
PRINTS	PR01271	Histone deacetylase signature	128	148	2.0E-58	IPR003084
PRINTS	PR01271	Histone deacetylase signature	76	94	2.0E-58	IPR003084
PRINTS	PR01271	Histone deacetylase signature	228	241	2.0E-58	IPR003084
PRINTS	PR01271	Histone deacetylase signature	107	124	2.0E-58	IPR003084
PRINTS	PR01271	Histone deacetylase signature	245	263	2.0E-58	IPR003084
PRINTS	PR01271	Histone deacetylase signature	169	185	2.0E-58	IPR003084
MobiDBLite	mobidb-lite	consensus disorder prediction	387	458	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	390	417	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	431	458	-	-

Gene Ontology

Molecular Function:

GO:0004407 (histone deacetylase activity)

KEGG Pathway

KO Term:

K06067 (histone deacetylase 1/2 [EC:3.5.1.98])

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04213 (Longevity regulating pathway - multiple species) map04213 (Longevity regulating pathway - multiple species) ko04330 (Notch signaling pathway) map04330 (Notch signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G63110.1	histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.	7.91E-234
RefSeq	XP_025821330.1	histone deacetylase 6-like isoform X3 [Panicum hallii]	0
Swiss-Prot	Q9FML2	Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1	7.58E-233
TrEMBL	A0A1E5VIV9	Histone deacetylase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0013923 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg22524, jg27523, jg37594
Aizoaceae	Mesembryanthemum crystallinum	3	gene_19483, gene_19885, gene_6783
Amaranthaceae	Atriplex hortensis	3	Ah000539, Ah006577, Ah031725
Amaranthaceae	Beta vulgaris	2	BVRB_5g117920, BVRB_9g218010
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg11170, Sbi_jg19334, Sbi_jg285, Sbi_jg36223 ... Sbi_jg43890, Sbi_jg46144
Amaranthaceae	Salicornia europaea	3	Seu_jg18031, Seu_jg20484, Seu_jg4316
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00013848, GOSA_00014885, GOSA_00022160
Amaranthaceae	Suaeda glauca	8	Sgl25357, Sgl30533, Sgl55158, Sgl60408, Sgl65464, Sgl65465 ... Sgl65498, Sgl69819
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000006091, gene:ENSEOMG00000010777 ... gene:ENSEOMG00000014298, gene:ENSEOMG00000020239, gene:ENSEOMG00000024764, gene:ENSEOMG00000024994, gene:ENSEOMG00000030047, gene:ENSEOMG00000042795, gene:ENSEOMG00000051056
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0000590, CQ.Regalona.r1.2BG0001900 ... CQ.Regalona.r1.4AG0013200, CQ.Regalona.r1.4BG0015480, CQ.Regalona.r1.5AG0023500, CQ.Regalona.r1.5BG0025000
Anacardiaceae	Pistacia vera	3	pistato.v30057020, pistato.v30107170, pistato.v30139780
Apiaceae	Apium graveolens	5	Ag10G00121, Ag11G03444, Ag11G04365, Ag3G00588, Ag5G00708
Arecaceae	Cocos nucifera	5	COCNU_06G001220, COCNU_14G000530, COCNU_14G005740 ... COCNU_15G000030, scaffold016592G000080
Arecaceae	Phoenix dactylifera	6	gene-LOC103706146, gene-LOC103708153, gene-LOC103709297 ... gene-LOC103721325, gene-LOC103721589, gene-LOC113462888
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.2263.V1.1, AsparagusV1_01.2685.V1.1 ... AsparagusV1_02.853.V1.1, AsparagusV1_02.854.V1.1, AsparagusV1_03.3063.V1.1
Asteraceae	Flaveria trinervia	3	Ftri12G29285, Ftri2G21553, FtriNA33547
Brassicaceae	Arabidopsis thaliana	4	AT3G44680.1, AT4G38130.1, AT5G35600.1, AT5G63110.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10002540m.g.v1.0, Thhalv10005608m.g.v1.0 ... Thhalv10025146m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g26240.v2.2, Sp5g13800.v2.2, Sp5g16560.v2.2 ... Sp7g37620.v2.2
Brassicaceae	Brassica nigra	8	BniB01g060620.2N, BniB06g011560.2N, BniB07g042070.2N ... BniB07g062040.2N, BniB08g057690.2N, BniB08g061490.2N, BniB08g061500.2N, BniB08g061510.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq01G1913, Ceq03G1442, Ceq05G1765, Ceq09G0007
Casuarinaceae	Casuarina glauca	4	Cgl01G2080, Cgl03G1577, Cgl05G1756, Cgl09G0006
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno07g00140, gene.Cymno07g07130, gene.Cymno09g05450 ... gene.Cymno11g05370
Dunaliellaceae	Dunaliella salina	3	Dusal.0001s00049.v1.0, Dusal.0020s00020.v1.0 ... Dusal.0591s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g16210, gene.Thate04g01140, gene.Thate09g05930
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9405
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG08.477, evm.TU.LG09.725, evm.TU.LG10.683
Plantaginaceae	Plantago ovata	5	Pov_00012250, Pov_00014185, Pov_00015850, Pov_00033780 ... Pov_00037523
Plumbaginaceae	Limonium bicolor	3	Lb3G19854, Lb4G25722, Lb6G31512
Poaceae	Echinochloa crus-galli	14	AH06.2118, AH07.828, AH09.893, BH02.2235, BH05.1650 ... BH06.1934, BH07.973, BH08.1152, BH09.963, CH02.2390, CH06.2161, CH07.718, CH08.1280, CH09.1079
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_1AG0022330, gene-QOZ80_1BG0072590 ... gene-QOZ80_2AG0106100, gene-QOZ80_2AG0135470, gene-QOZ80_2BG0159570, gene-QOZ80_4AG0318680, gene-QOZ80_4BG0350150, gene-QOZ80_6AG0543680, gene-QOZ80_6BG0497030, gene-QOZ80_8AG0626910, gene-QOZ80_8BG0655760, gene-QOZ80_8BG0666260
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0165820.1, HORVU.MOREX.r3.4HG0346510.1 ... HORVU.MOREX.r3.5HG0495300.1.CDS1, HORVU.MOREX.r3.6HG0578170.1, HORVU.MOREX.r3.6HG0578930.1, HORVU.MOREX.r3.7HG0715600.1
Poaceae	Lolium multiflorum	7	gene-QYE76_006558, gene-QYE76_021568, gene-QYE76_034637 ... gene-QYE76_043452, gene-QYE76_048251, gene-QYE76_053498, gene-QYE76_053706
Poaceae	Oryza coarctata	9	Oco01G013450, Oco02G013610, Oco03G005620, Oco04G005800 ... Oco07G005150, Oco11G011780, Oco12G011860, Oco15G006670, Oco16G006490
Poaceae	Oryza sativa	9	LOC_Os01g40350.1, LOC_Os01g40400.1, LOC_Os02g12350.1 ... LOC_Os02g12380.1, LOC_Os04g33480.1, LOC_Os06g38470.1, LOC_Os08g25570.1, LOC_Os11g09370.1, LOC_Os11g09418.1
Poaceae	Paspalum vaginatum	6	gene-BS78_03G176400, gene-BS78_04G085200 ... gene-BS78_05G109800, gene-BS78_06G083400, gene-BS78_07G107000, gene-BS78_10G175800
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0202019, Pt_Chr0302847, Pt_Chr0302917, Pt_Chr0303060 ... Pt_Chr0303072, Pt_Chr0400554, Pt_Chr0405914, Pt_Chr0701390
Poaceae	Sporobolus alterniflorus	15	Chr02G016840, Chr05G017190, Chr06G028580, Chr06G032690 ... Chr06G032730, Chr0G019720, Chr0G029240, Chr10G017040, Chr11G005410, Chr15G019840, Chr15G024070, Chr16G012960, Chr17G012380, Chr23G013680, Chr29G007510
Poaceae	Thinopyrum elongatum	7	Tel2E01G520900, Tel2E01G521000, Tel3E01G198400 ... Tel5E01G471700, Tel6E01G359200, Tel6E01G363200, Tel7E01G612000
Poaceae	Triticum dicoccoides	9	gene_TRIDC2AG042390, gene_TRIDC2BG045510 ... gene_TRIDC5AG044140, gene_TRIDC6AG026100, gene_TRIDC6AG026730, gene_TRIDC6BG032360, gene_TRIDC6BG032740, gene_TRIDC7AG051150, gene_TRIDC7BG042690
Poaceae	Triticum aestivum	17	TraesCS2A02G293200.1, TraesCS2B02G309700.1 ... TraesCS2D02G291000.1, TraesCS4A02G213200.1, TraesCS4B02G102600.1, TraesCS4D02G100000.1, TraesCS5A02G295000.1.cds1, TraesCS5D02G302400.1.cds1, TraesCS6A02G181100.1, TraesCS6A02G184100.2, TraesCS6B02G210200.1, TraesCS6B02G212600.3, TraesCS6D02G168400.1, TraesCS6D02G171000.1, TraesCS7A02G365600.3, TraesCS7B02G261800.1, TraesCS7D02G356800.1
Poaceae	Zea mays	5	Zm00001eb084120_P001, Zm00001eb177560_P001 ... Zm00001eb205290_P002, Zm00001eb240210_P002, Zm00001eb385490_P002
Poaceae	Zoysia japonica	6	nbis-gene-10152, nbis-gene-33394, nbis-gene-41135 ... nbis-gene-43327, nbis-gene-50929, nbis-gene-7754
Poaceae	Zoysia macrostachya	6	Zma_g12442, Zma_g12544, Zma_g21219, Zma_g22831, Zma_g30745 ... Zma_g32986
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.983, evm.TU.LG03.1890, evm.TU.LG06.1364 ... evm.TU.LG09.981, evm.TU.LG11.704, evm.TU.LG14.175
Posidoniaceae	Posidonia oceanica	3	gene.Posoc04g11550, gene.Posoc04g20140, gene.Posoc05g22720
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.1064 ... evm.TU.Scaffold_13_RagTag.463, evm.TU.Scaffold_1_RagTag.2410
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14738, nbisL1-mrna-30643, nbisL1-mrna-5161
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-5033, nbisL1-mrna-7463, nbisL1-mrna-8164
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12622, nbisL1-mrna-21034, nbisL1-mrna-3171
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000010l.138, evm.TU.utg000015l.242 ... evm.TU.utg000016l.3
Rhizophoraceae	Kandelia obovata	3	Maker00008887, Maker00015452, Maker00017258
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-18551, nbisL1-mrna-4161, nbisL1-mrna-4562 ... nbisL1-mrna-720
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-22153, nbisL1-mrna-22535, nbisL1-mrna-22536 ... nbisL1-mrna-8699
Salicaceae	Populus euphratica	4	populus_peu00125, populus_peu08383, populus_peu28698 ... populus_peu30123
Solanaceae	Lycium barbarum	3	gene-LOC132600547, gene-LOC132601610, gene-LOC132609445
Solanaceae	Solanum chilense	4	SOLCI001597500, SOLCI002971200, SOLCI004502400 ... SOLCI006985000
Solanaceae	Solanum pennellii	4	gene-LOC107004476, gene-LOC107014089, gene-LOC107020997 ... gene-LOC107031546
Tamaricaceae	Reaumuria soongarica	5	STRG.8613_chr06_-, STRG.8616_chr06_-, gene_10424, gene_14351 ... gene_820
Tamaricaceae	Tamarix chinensis	5	TC01G2597, TC03G2708, TC08G2504, TC09G2116, TC09G2122
Zosteraceae	Zostera marina	4	Zosma01g01880.v3.1, Zosma04g24440.v3.1, Zosma06g10000.v3.1 ... Zosma06g18840.v3.1