Basic Information
Locus ID:
CH08.1273
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 20480446 | 20483035 | + | CH08.1273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 88,504.28 Da | 37.18 | 105.58 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 680 | 735 | 3.6E-10 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 161 | 178 | 0.96 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 73 | 7.5E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 312 | 372 | 2.3E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 237 | 298 | 5.8E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 78 | 400 | 7.82E-45 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 662 | 792 | 2.18E-25 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 301 | 599 | 3.14E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 141 | 791 | 3.6E-267 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 125 | 7.7E-12 | IPR032675 |
| Gene3D | G3DSA:3.30.1490.310 | - | 615 | 672 | 3.6E-267 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 338 | 351 | 7.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 722 | 735 | 7.8E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13380.1 | BRI1-like 3. Similar to BRI, brassinosteroid receptor protein. | 1.41E-44 |
| RefSeq | XP_025820814.1 | brassinosteroid LRR receptor kinase BRL3-like [Panicum hallii] | 7.45E-162 |
| Q6ZCZ2 | Brassinosteroid LRR receptor kinase BRL3 OS=Oryza sativa subsp. japonica OX=39947 GN=BRL3 PE=2 SV=1 | 2.34E-154 | |
| TrEMBL | A0A835B7W2 | non-specific serine/threonine protein kinase OS=Digitaria exilis OX=1010633 GN=HU200_047657 PE=4 SV=1 | 2.36E-189 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology