Basic Information
Locus ID:
CH08.1212
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 18382558 | 18384043 | + | CH08.1212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.85 | 49,232.01 Da | 51.86 | 90.80 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 120 | 344 | 6.28E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 105 | 373 | 1.3E-9 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025822370.1 | putative F-box/LRR-repeat protein At5g41840 [Panicum hallii] | 5.83E-48 |
| TrEMBL | A0A3L6PN83 | FBD domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM14G10040 PE=4 SV=1 | 5.32E-98 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH08.1101, CH08.1212 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7BG0591040, gene-QOZ80_7BG0591060 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G016940, Chr24G000100 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38250, nbis-gene-54026 |