Basic Information
Locus ID:
CH08.1175
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 17020646 | 17034231 | + | CH08.1175 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 66,751.50 Da | 26.28 | 105.33 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 462 | 558 | 2.50708E-29 | - |
| CDD | cd00030 | C2 | 291 | 393 | 4.10829E-26 | - |
| Pfam | PF00168 | C2 domain | 460 | 555 | 7.5E-27 | IPR000008 |
| Pfam | PF00168 | C2 domain | 289 | 393 | 6.2E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 99 | 276 | 5.5E-18 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 287 | 419 | 1.3E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 456 | 579 | 2.99E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 285 | 426 | 8.4E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 439 | 578 | 1.6E-36 | IPR035892 |
| SMART | SM00239 | C2_3c | 461 | 559 | 2.3E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 290 | 390 | 3.0E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 442 | 560 | 22.082685 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 267 | 391 | 20.818583 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 94 | 276 | 29.992947 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 525 | 533 | 2.4E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 503 | 516 | 2.4E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 477 | 489 | 2.4E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 4.17E-280 |
| RefSeq | XP_004973183.1 | synaptotagmin-5 [Setaria italica] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 4.0E-279 | |
| TrEMBL | A0A1D6F2D9 | Synaptotagmin-5 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d007034 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology