Basic Information
Locus ID:
CH08.1165
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the glycosyltransferase 1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 16618814 | 16647609 | - | CH08.1165 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 315,800.41 Da | 44.55 | 77.92 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 1829 | 1922 | 1.04327E-14 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 2379 | 2484 | 1.81958E-27 | - |
| CDD | cd01647 | RT_LTR | 2097 | 2273 | 1.95901E-74 | - |
| Pfam | PF00665 | Integrase core domain | 2677 | 2773 | 1.3E-10 | IPR001584 |
| Pfam | PF17921 | Integrase zinc binding domain | 2603 | 2658 | 2.9E-9 | IPR041588 |
| Pfam | PF00534 | Glycosyl transferases group 1 | 503 | 675 | 2.4E-22 | IPR001296 |
| Pfam | PF00862 | Sucrose synthase | 199 | 464 | 1.9E-8 | IPR000368 |
| Pfam | PF03732 | Retrotransposon gag protein | 1304 | 1387 | 5.1E-9 | IPR005162 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2115 | 2271 | 4.4E-18 | IPR000477 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 2338 | 2435 | 6.0E-26 | IPR041577 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 2673 | 2778 | 7.46E-24 | IPR012337 |
| SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 213 | 692 | 5.5E-66 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 2055 | 2471 | 4.11E-116 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 1826 | 1927 | 2.81E-9 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1807 | 1950 | 5.0E-16 | IPR021109 |
| Gene3D | G3DSA:1.10.340.70 | - | 2567 | 2658 | 4.9E-14 | - |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 199 | 697 | 6.1E-177 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 2668 | 2778 | 1.1E-26 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 2284 | 2377 | 5.0E-21 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 2056 | 2198 | 1.7E-57 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 2136 | 2273 | 1.7E-57 | IPR043128 |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 463 | 682 | 6.1E-177 | - |
| TIGRFAM | TIGR02468 | sucrsPsyn_pln: sucrose phosphate synthase | 20 | 966 | 0.0 | IPR012819 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 2673 | 2778 | 18.67828 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1596 | 1615 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 175 | - | - |
| Coils | Coil | Coil | 1589 | 1631 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20280.1 | sucrose phosphate synthase 1F. Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted. | 0 |
| RefSeq | XP_004973188.1 | probable sucrose-phosphate synthase 4 [Setaria italica] | 0 |
| Q6ZHZ1 | Probable sucrose-phosphate synthase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=SPS4 PE=2 SV=1 | 0 | |
| TrEMBL | K3YG02 | Sucrose-phosphate synthase OS=Setaria italica OX=4555 GN=101761271 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||