Basic Information
Locus ID:
CH08.1047
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH08 | 14142695 | 14147932 | - | CH08.1047 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 58,313.37 Da | 48.32 | 89.71 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 382 | 431 | 4.2017E-4 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 149 | 269 | 2.3E-13 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 81 | 142 | 1.9E-6 | IPR020683 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 283 | 325 | 3.9E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 81 | 337 | 4.64E-48 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 380 | 439 | 1.48E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 369 | 450 | 1.0E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 208 | 342 | 1.0E-24 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 73 | 204 | 2.0E-28 | IPR036770 |
| SMART | SM00184 | ring_2 | 382 | 431 | 7.2E-5 | IPR001841 |
| SMART | SM00248 | ANK_2a | 178 | 208 | 160.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 140 | 2.3E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 284 | 313 | 4.6E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 241 | 270 | 1.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 144 | 173 | 0.022 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 241 | 273 | 13.35717 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 284 | 316 | 11.674439 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 144 | 175 | 8.534378 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 144 | 176 | 9.29725 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 284 | 315 | 10.471169 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 241 | 269 | 12.832462 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 382 | 432 | 10.33534 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 143 | 12.636 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 142 | 11.850801 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 397 | 406 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 242 | 257 | 8.0E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 300 | 314 | 8.0E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 2.06E-143 |
| RefSeq | XP_025822569.1 | probable E3 ubiquitin-protein ligase XBOS35 [Panicum hallii] | 9.51E-299 |
| Q7EZ44 | Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS35 PE=2 SV=1 | 8.52E-258 | |
| TrEMBL | A0A2T7D5L2 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G092200 PE=4 SV=1 | 2.15E-297 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology