halophFGD

Basic Information

Locus ID: CH07.979

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH07	9385747	9387580	+	CH07.979

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.21	45,647.51 Da	45.71	80.02	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	11	50	5.0E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	3	75	7.85E-13	IPR036047
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	100	271	1.26E-5	IPR011043
SMART	SM00256	fbox_2	13	56	0.0031	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021318649.1	uncharacterized protein LOC8080290 [Sorghum bicolor]	1.48E-181
TrEMBL	A0A1Z5RBL1	DUF1618 domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3006G013600 PE=4 SV=1	4.86E-150

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	4	AH07.1122, BH03.150, BH07.1201, CH07.979
Poaceae	Oryza coarctata	1	Oco12G012700