Basic Information
Locus ID:
CH07.928
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 8770251 | 8771021 | - | CH07.928 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 26,306.06 Da | 62.31 | 82.07 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 185 | 227 | 2.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 184 | 233 | 5.65E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 245 | 1.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 185 | 226 | 3.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 185 | 227 | 12.813844 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10160.1 | RING/U-box superfamily protein. | 2.04E-15 |
| RefSeq | XP_039788948.1 | RING-H2 finger protein ATL14-like [Panicum virgatum] | 2.79E-82 |
| Q9SN27 | E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1 | 2.0E-14 | |
| TrEMBL | A0A2T7F4A3 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G104000 PE=4 SV=1 | 5.12E-85 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH07.1150, CH07.928 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0107810, gene-QOZ80_2BG0161430 |
| Poaceae | Oryza coarctata | 1 | Oco04G007070 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G104300 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013670, Chr0G033250, Chr15G023330 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50886 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12516 |