Basic Information
Locus ID:
CH07.924
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 8723306 | 8723905 | - | CH07.924 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 21,354.15 Da | 54.01 | 109.80 | 0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 143 | 186 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 192 | 4.62E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 192 | 4.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 143 | 185 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 143 | 186 | 12.076194 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38140.1 | RING/U-box superfamily protein. | 1.16E-12 |
| RefSeq | XP_025819195.1 | probable E3 ubiquitin-protein ligase ATL45 [Panicum hallii] | 3.15E-41 |
| Q9SZL4 | RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1 | 1.13E-11 | |
| TrEMBL | A0A2S3GN30 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G105900 PE=4 SV=1 | 7.12E-40 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH07.1025, AH07.1027, AH07.1028, BH07.1144, BH07.1146 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0107740, gene-QOZ80_2AG0108990 ... |
| Poaceae | Oryza coarctata | 3 | Oco03G006770, Oco04G007040, Oco04G007050 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g15000.1, LOC_Os02g15010.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G104000, gene-BS78_04G104100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013650, Chr0G033270, Chr15G023350 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G503100, Tel1E01G503200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1BG052490, gene_TRIDC1BG052500 |
| Poaceae | Triticum aestivum | 14 | TraesCS1A02G311600.1.cds1, TraesCS1B02G323200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb238450_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34201, nbis-gene-53144 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12514, Zma_g15401 |