Basic Information
Locus ID:
CH07.922
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 8699388 | 8700056 | - | CH07.922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 23,448.87 Da | 54.64 | 88.33 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 159 | 202 | 5.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 210 | 1.7E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 208 | 9.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 160 | 201 | 5.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 160 | 202 | 12.120453 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42200.1 | RING/U-box superfamily protein. | 9.32E-12 |
| RefSeq | XP_048561107.1 | probable E3 ubiquitin-protein ligase ATL45 [Triticum urartu] | 1.38E-43 |
| Q8L9W3 | E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana OX=3702 GN=ATL23 PE=1 SV=2 | 9.1E-11 | |
| TrEMBL | A0A3L6RTC8 | RING-H2 finger protein ATL4O OS=Panicum miliaceum OX=4540 GN=C2845_PM11G19300 PE=4 SV=1 | 1.66E-53 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||