Basic Information
Locus ID:
CH07.889
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 8163643 | 8164608 | + | CH07.889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 35,373.62 Da | 37.98 | 79.13 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 64 | 312 | 1.26619E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 232 | 269 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 189 | 225 | 1.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 101 | 139 | 0.024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 146 | 182 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 12 | 312 | 1.24E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 313 | 5.7E-85 | IPR015943 |
| SMART | SM00320 | WD40_4 | 229 | 269 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 273 | 313 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 225 | 2.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 182 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 139 | 5.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 54 | 93 | 0.001 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 106 | 148 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 106 | 139 | 8.65015 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 192 | 227 | 10.416506 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 149 | 184 | 9.493783 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 236 | 278 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 236 | 271 | 8.940149 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 234 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 149 | 191 | 11.577833 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 212 | 226 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 169 | 183 | 8.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 126 | 140 | 8.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 212 | 226 | 8.4E-7 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29260.1 | peroxin 7. Encodes the peroxisomal targeting signal type 2 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS2 consensus sequence (RLX5HL or a variant) within the first 30 or so amino acids. RNAi experiments suggest that PEX7 is necessary for the maintenance of glyoxysomal but not leaf peroxisomal function. | 3.42E-53 |
| RefSeq | XP_002451854.1 | peroxisome biogenesis protein 7 [Sorghum bicolor] | 3.76E-96 |
| Q9XF57 | Peroxisome biogenesis protein 7 OS=Arabidopsis thaliana OX=3702 GN=PEX7 PE=1 SV=2 | 3.31E-52 | |
| TrEMBL | C5XYZ8 | Peroxin-7 OS=Sorghum bicolor OX=4558 GN=SORBI_3004G106700 PE=3 SV=1 | 8.5E-95 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22148 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22321 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g204030 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15867, Sbi_jg56694 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13886 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012635 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78224, Sgl80715 |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000016753, gene:ENSEOMG00000028733 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0001970, CQ.Regalona.r1.9BG0020440 |
| Apiaceae | Apium graveolens | 1 | Ag6G01070 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G002540, COCNU_03G013700 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723853 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G01280 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G29260.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g25120.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g016740.2N, BniB04g043730.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1286 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1329 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g09620 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0059s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g02080, gene.Thate03g19030, gene.Thate08g14580 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.820 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005587 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24357, Lb4G24361 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.999, BH07.1113, CH07.889 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0107560, gene-QOZ80_2BG0161180 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0299280.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021899 |
| Poaceae | Oryza coarctata | 2 | Oco03G006650, Oco04G006850 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g14790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G101200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0206424 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G606800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG054650, gene_TRIDC3BG061230 |
| Poaceae | Triticum aestivum | 1 | TraesCS3D02G373900.1 |
| Poaceae | Zea mays | 1 | Zm00001eb238680_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-34216, nbis-gene-37356, nbis-gene-53129 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12504 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.318 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g03070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.301 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24029 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8161 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20978 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.71 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015620 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19106 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16828 |
| Salicaceae | Populus euphratica | 2 | populus_peu09938, populus_peu18050 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636443 |
| Solanaceae | Solanum chilense | 1 | SOLCI002011700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015368 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10710_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0456 |
| Zosteraceae | Zostera marina | 1 | Zosma03g36360.v3.1 |