Basic Information
Locus ID:
CH07.793
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 7052457 | 7053200 | + | CH07.793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 25,990.99 Da | 55.76 | 89.56 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 188 | 233 | 8.6E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 184 | 239 | 1.65E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 237 | 8.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 189 | 232 | 5.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 189 | 233 | 11.987676 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35840.1 | RING/U-box superfamily protein. | 4.36E-12 |
| RefSeq | XP_004954625.1 | E3 ubiquitin-protein ligase Os06g0535400 [Setaria italica] | 4.19E-75 |
| Q8GT75 | NEP1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=NIP1 PE=1 SV=2 | 4.29E-11 | |
| TrEMBL | A0A368PGL5 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_1G029500v2 PE=4 SV=1 | 9.49E-74 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH07.910, CH07.793 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G093700 |
| Poaceae | Zea mays | 1 | Zm00001eb239580_P001 |