Basic Information
Locus ID:
CH07.773
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
phosphatase 2A 55 kDa regulatory subunit B'
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 6831954 | 6840098 | - | CH07.773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 59,957.07 Da | 50.13 | 68.88 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 274 | 0.14 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 53 | 529 | 4.12E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 102 | 535 | 3.8E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 45 | 80 | 7.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 0.79 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 382 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 285 | 325 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 118 | 158 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 440 | 450.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 22 | 537 | 3.7E-195 | IPR000009 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 118 | 132 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 59 | 79 | 1.2E-157 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 105 | 133 | 1.2E-157 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 274 | 301 | 1.2E-157 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 359 | 386 | 1.2E-157 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 302 | 330 | 1.2E-157 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 134 | 162 | 1.2E-157 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 413 | 439 | 1.2E-157 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 331 | 358 | 1.2E-157 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 246 | 273 | 1.2E-157 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 506 | 535 | 1.2E-157 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 387 | 412 | 1.2E-157 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 4.53E-282 |
| RefSeq | XP_004951407.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform [Setaria italica] | 0 |
| A2X2K3 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3L6RNQ0 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Panicum miliaceum OX=4540 GN=C2845_PM11G01650 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology