Basic Information
Locus ID:
CH07.766
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 6643457 | 6646526 | + | CH07.766 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 110,199.94 Da | 37.79 | 98.11 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 696 | 972 | 8.29161E-91 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 70 | 5.2E-7 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 694 | 969 | 5.9E-41 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 554 | 575 | 0.83 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 78 | 132 | 1.0E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 147 | 166 | 1.0 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 291 | 604 | 2.61E-45 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 287 | 1.87E-50 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 675 | 969 | 5.6E-68 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 147 | 211 | 2.3E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 212 | 341 | 2.4E-39 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 675 | 772 | 3.1E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 342 | 618 | 2.4E-66 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 146 | 5.2E-28 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 773 | 989 | 2.3E-57 | - |
| SMART | SM00369 | LRR_typ_2 | 551 | 574 | 92.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 690 | 970 | 5.2E-24 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 96 | 120 | 38.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 338 | 362 | 76.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 194 | 218 | 75.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 690 | 970 | 34.661526 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 821 | 833 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 696 | 723 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 9.11E-106 |
| RefSeq | XP_034573975.1 | receptor-like protein kinase HSL1 [Setaria viridis] | 0 |
| P47735 | Receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=RLK5 PE=1 SV=1 | 3.89E-69 | |
| TrEMBL | A0A4U6W8R3 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G035700v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology