Basic Information
Locus ID:
CH07.761
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain of unknown function (DUF4283)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 6605833 | 6609476 | + | CH07.761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 97,786.93 Da | 47.11 | 85.70 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 720 | 832 | 5.26155E-26 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 733 | 832 | 3.6E-11 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 556 | 692 | 1.5E-21 | IPR011545 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 81 | 226 | 4.4E-14 | IPR025558 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 649 | 861 | 5.74E-22 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 503 | 711 | 5.33E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 495 | 712 | 3.6E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 714 | 875 | 2.8E-25 | IPR027417 |
| SMART | SM00487 | ultradead3 | 529 | 723 | 8.4E-21 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 510 | 538 | 9.041822 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 719 | 875 | 11.450036 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 539 | 709 | 19.531502 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 655 | 663 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 401 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.3 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 4.99E-113 |
| RefSeq | XP_039786278.1 | ATP-dependent RNA helicase drs1-like [Panicum virgatum] | 0 |
| Q0E2Q3 | Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 PE=3 SV=2 | 1.32E-125 | |
| TrEMBL | A0A8T0XNX4 | DUF4283 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG191600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology