Basic Information
Locus ID:
CH07.684
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Galactose oxidase, central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 5657273 | 5658496 | - | CH07.684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 42,638.80 Da | 53.21 | 72.36 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 35 | 66 | 8.3E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 188 | 233 | 9.8E-8 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 149 | 185 | 2.3E-4 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 31 | 83 | 3.66E-7 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 109 | 363 | 2.62E-36 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 97 | 324 | 1.1E-33 | IPR015915 |
| SMART | SM00612 | kelc_smart | 150 | 199 | 0.039 | IPR006652 |
| SMART | SM00612 | kelc_smart | 200 | 247 | 0.093 | IPR006652 |
| SMART | SM00256 | fbox_2 | 37 | 76 | 0.0014 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 3.11E-66 |
| RefSeq | XP_039788725.1 | F-box/kelch-repeat protein At1g80440-like [Panicum virgatum] | 4.11E-207 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 3.01E-65 | |
| TrEMBL | A0A1E5VIE1 | F-box/kelch-repeat protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0014166 PE=4 SV=1 | 4.39E-207 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology