Basic Information
Locus ID:
CH07.673
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Calmodulin binding protein-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 5544550 | 5558276 | - | CH07.673 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 188,348.69 Da | 54.98 | 68.48 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 1067 | 1084 | 3.6E-4 | IPR001878 |
| Pfam | PF07887 | Calmodulin binding protein-like | 185 | 387 | 1.6E-54 | IPR012416 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 1057 | 1093 | 1.09E-6 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 993 | 1030 | 6.28E-5 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 1000 | 1093 | 1.1E-8 | - |
| SMART | SM00343 | c2hcfinal6 | 1068 | 1084 | 0.0068 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 1008 | 1024 | 0.057 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 1069 | 1084 | 9.768098 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1472 | 1509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1438 | 1514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 849 | - | - |
| Coils | Coil | Coil | 1536 | 1556 | - | - |
| Coils | Coil | Coil | 943 | 963 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31000.1 | Calmodulin-binding protein. | 1.05E-21 |
| RefSeq | XP_039788713.1 | calmodulin-binding protein 60 E-like isoform X2 [Panicum virgatum] | 3.19E-112 |
| F4JR57 | Calmodulin-binding protein 60 F OS=Arabidopsis thaliana OX=3702 GN=CBP60F PE=2 SV=1 | 1.03E-20 | |
| TrEMBL | A0A3L6RI10 | CCHC-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G17720 PE=4 SV=1 | 1.37E-121 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH03.1681, BH02.1694, BH03.321, BH04.871, BH07.2625 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_3AG0221350, gene-QOZ80_3BG0267940 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G007240, Oco10G013850, Oco11G010490, Oco19G003500 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_06G044000, gene-BS78_08G060500, gene-BS78_K024200 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G030640, Chr01G034250, Chr03G009660, Chr05G004500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb384270_P001 |
| Poaceae | Zoysia japonica | 11 | nbis-gene-1295, nbis-gene-27399, nbis-gene-33913 ... |