Basic Information
Locus ID:
CH07.630
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 5057801 | 5059915 | - | CH07.630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.26 | 68,408.79 Da | 42.40 | 105.10 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 274 | 296 | 0.48 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 222 | 245 | 0.0022 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 59 | 99 | 2.22E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 346 | 609 | 8.63E-39 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 182 | 427 | 1.04E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 455 | 650 | 9.2E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 249 | 454 | 2.3E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 144 | 248 | 1.2E-16 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 222 | 247 | 6.9E-8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 486 | 511 | 0.043 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 167 | 195 | 430.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 460 | 485 | 36.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 566 | 590 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 248 | 273 | 0.025 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 380 | 405 | 0.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 196 | 221 | 0.34 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 513 | 538 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 406 | 431 | 700.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 592 | 617 | 84.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 274 | 299 | 0.0079 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 354 | 379 | 9.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 540 | 565 | 0.005 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 5.12E-98 |
| RefSeq | XP_004951542.1 | EIN3-binding F-box protein 1 [Setaria italica] | 3.57E-286 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 4.97E-97 | |
| TrEMBL | A0A1E5VY32 | EIN3-binding F-box protein 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0008956 PE=4 SV=1 | 7.21E-292 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology