Basic Information
Locus ID:
CH07.583
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 4711047 | 4715716 | + | CH07.583 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 39,934.07 Da | 51.49 | 73.82 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.05387E-28 | - |
| Pfam | PF09280 | XPC-binding domain | 244 | 299 | 1.7E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 6.3E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 149 | 185 | 1.0E-13 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 325 | 361 | 1.1E-11 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 143 | 195 | 5.11E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 81 | 1.17E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 312 | 367 | 2.79E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 240 | 306 | 8.5E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 317 | 365 | 1.7E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 233 | 299 | 1.1E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 140 | 190 | 6.8E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.0E-27 | - |
| SMART | SM00165 | uba_6 | 326 | 363 | 7.4E-9 | IPR015940 |
| SMART | SM00165 | uba_6 | 147 | 187 | 2.9E-6 | IPR015940 |
| SMART | SM00727 | CBM | 242 | 285 | 3.9E-5 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.4E-21 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 369 | 1.8E-122 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 324 | 364 | 15.028895 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.82571 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 146 | 188 | 12.570991 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 320 | 336 | 5.1E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 337 | 351 | 5.1E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 270 | 292 | 5.1E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 352 | 367 | 5.1E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 110 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 1.38E-147 |
| RefSeq | XP_004951696.1 | ubiquitin receptor RAD23b [Setaria italica] | 1.95E-222 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 5.37E-145 | |
| TrEMBL | K3YTG5 | Ubiquitin receptor RAD23 OS=Setaria italica OX=4555 GN=101761391 PE=3 SV=1 | 4.41E-221 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology