Basic Information
Locus ID:
CH07.460
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein of unknown function (DUF1668)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 3641435 | 3644878 | - | CH07.460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 58,835.58 Da | 59.02 | 68.49 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07893 | Protein of unknown function (DUF1668) | 296 | 543 | 1.7E-64 | IPR012871 |
| SUPERFAMILY | SSF57850 | RING/U-box | 71 | 110 | 1.32E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 119 | 4.8E-7 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 143 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18710.1 | plant U-box 29. Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | 4.21E-10 |
| RefSeq | XP_015641427.1 | uncharacterized protein LOC4340361 [Oryza sativa Japonica Group] | 1.62E-73 |
| Q9LSA6 | U-box domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=PUB29 PE=1 SV=1 | 4.18E-9 | |
| TrEMBL | A0A835F5G2 | DUF1618 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_018001 PE=4 SV=1 | 1.86E-94 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology