halophFGD

Basic Information

Locus ID: CH07.3895

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Thymidine

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH07	45407852	45409917	-	CH07.3895

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.60	34,370.40 Da	41.25	98.99	0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06462	Peptidase_S24_S26	1	47	7.59272E-10	-
Pfam	PF00717	Peptidase S24-like	1	45	1.3E-6	IPR015927
SUPERFAMILY	SSF51306	LexA/Signal peptidase	1	43	4.97E-6	IPR036286

KEGG Pathway

KO Term:

K00857 (thymidine kinase [EC:2.7.1.21])

Pathway:

ko00240 (Pyrimidine metabolism) map00240 (Pyrimidine metabolism) ko00983 (Drug metabolism - other enzymes) map00983 (Drug metabolism - other enzymes) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Reaction:

R01567 (ATP + Thymidine <=> ADP + dTMP) R02099 (ATP + Deoxyuridine <=> ADP + dUMP) R08233 (5-Fluorodeoxyuridine + ATP <=> 5-Fluorodeoxyuridine monophosphate + ADP)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G52600.1	Peptidase S24/S26A/S26B/S26C family protein.	3.02E-30
RefSeq	XP_015629434.1	uncharacterized protein LOC4331377 [Oryza sativa Japonica Group]	5.97E-82
Swiss-Prot	P13679	Signal peptidase complex catalytic subunit SEC11C OS=Canis lupus familiaris OX=9615 GN=SEC11C PE=1 SV=3	7.21E-18
TrEMBL	A0A1E5W7Q7	DUF295 domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0005540 PE=4 SV=1	2.63E-88

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Arecaceae	Cocos nucifera	1	COCNU_04G008290
Arecaceae	Phoenix dactylifera	1	gene-LOC103695459
Poaceae	Echinochloa crus-galli	34	AH02.3272, AH02.3273, AH02.3796, AH03.2533, AH04.980 ... AH06.1103, AH08.1984, AH08.2092, BH02.3824, BH03.2682, BH03.455, BH03.477, BH05.1833, BH07.3642, BH07.3835, BH07.4132, BH07.4134, BH08.2195, BH08.2196, CH01.1323, CH01.5436, CH02.205, CH03.1050, CH03.2886, CH03.2888, CH03.532, CH03.534, CH03.541, CH03.558, CH07.3713, CH07.3895, CH07.3899, CH08.2390, CH09.2859
Poaceae	Eleusine coracana subsp. coracana	19	gene-QOZ80_2AG0151040, gene-QOZ80_2BG0206460 ... gene-QOZ80_3AG0235060, gene-QOZ80_3AG0238380, gene-QOZ80_3BG0283200, gene-QOZ80_3BG0293070, gene-QOZ80_6AG0535010, gene-QOZ80_6AG0538280, gene-QOZ80_6AG0541120, gene-QOZ80_6AG0541140, gene-QOZ80_6BG0488220, gene-QOZ80_7AG0557770, gene-QOZ80_7AG0557840, gene-QOZ80_7BG0588790, gene-QOZ80_7BG0588920, gene-QOZ80_7BG0611400, gene-QOZ80_8AG0633080, gene-QOZ80_8AG0633960, gene-QOZ80_9AG0671190
Poaceae	Hordeum vulgare	13	HORVU.MOREX.r3.1HG0038220.1.CDS1 ... HORVU.MOREX.r3.1HG0038230.1.CDS1, HORVU.MOREX.r3.1HG0038240.1.CDS1, HORVU.MOREX.r3.2HG0190170.1.CDS1, HORVU.MOREX.r3.2HG0200120.1, HORVU.MOREX.r3.2HG0215340.1.CDS1, HORVU.MOREX.r3.2HG0215350.1.CDS1, HORVU.MOREX.r3.3HG0307220.1.CDS1, HORVU.MOREX.r3.4HG0340640.1, HORVU.MOREX.r3.5HG0479420.1, HORVU.MOREX.r3.6HG0571620.1.CDS1, HORVU.MOREX.r3.6HG0622050.1.CDS1, HORVU.MOREX.r3.7HG0675810.1.CDS1
Poaceae	Lolium multiflorum	20	gene-QYE76_005851, gene-QYE76_025186, gene-QYE76_025196 ... gene-QYE76_029654, gene-QYE76_029655, gene-QYE76_033620, gene-QYE76_055947, gene-QYE76_059645, gene-QYE76_059647, gene-QYE76_059648, gene-QYE76_059649, gene-QYE76_062013, gene-QYE76_062016, gene-QYE76_063071, gene-QYE76_063072, gene-QYE76_063280, gene-QYE76_063284, gene-QYE76_069369, gene-QYE76_069386, gene-QYE76_071691
Poaceae	Oryza coarctata	16	Oco01G011790, Oco01G029600, Oco02G030780, Oco05G000740 ... Oco06G000730, Oco07G003830, Oco07G009010, Oco08G008950, Oco13G002480, Oco13G002800, Oco13G012080, Oco14G002700, Oco14G012340, Oco22G005220, Oco22G008260, Oco24G003730
Poaceae	Oryza sativa	11	LOC_Os01g27680.1, LOC_Os01g71250.1, LOC_Os03g02210.1 ... LOC_Os04g40920.1, LOC_Os07g08040.1, LOC_Os07g40160.1, LOC_Os08g18890.1, LOC_Os08g25670.1, LOC_Os08g27540.3, LOC_Os11g12470.1, LOC_Os11g34790.1
Poaceae	Paspalum vaginatum	8	gene-BS78_01G141900, gene-BS78_02G051000 ... gene-BS78_02G236200, gene-BS78_02G333600, gene-BS78_03G328000, gene-BS78_03G349100, gene-BS78_07G184300, gene-BS78_07G184400
Poaceae	Puccinellia tenuiflora	21	Pt_Chr0101983, Pt_Chr0104565, Pt_Chr0104566, Pt_Chr0106320 ... Pt_Chr0201650, Pt_Chr0301837, Pt_Chr0306674, Pt_Chr0306676, Pt_Chr0306677, Pt_Chr0306888, Pt_Chr0306933, Pt_Chr0306951, Pt_Chr0306952, Pt_Chr0504597, Pt_Chr0505724, Pt_Chr0600763, Pt_Chr0702256, Pt_Chr0702259, Pt_Chr0704137, Pt_Chr0704138, Pt_Chr0705331
Poaceae	Sporobolus alterniflorus	9	Chr01G038310, Chr02G002910, Chr05G031540, Chr06G013940 ... Chr07G024310, Chr12G001140, Chr12G001200, Chr16G003480, Chr16G016080
Poaceae	Thinopyrum elongatum	19	Tel1E01G276000, Tel2E01G711100, Tel2E01G752800 ... Tel2E01G807700, Tel2E01G825600, Tel2E01G864900, Tel3E01G307800, Tel3E01G646700, Tel3E01G647400, Tel4E01G064100, Tel4E01G110600, Tel4E01G225600, Tel4E01G578100, Tel5E01G397800, Tel5E01G886300, Tel6E01G264600, Tel6E01G614800, Tel7E01G144900, Tel7E01G235800
Poaceae	Triticum dicoccoides	28	gene_TRIDC2AG080290, gene_TRIDC2BG072850 ... gene_TRIDC2BG088440, gene_TRIDC2BG088460, gene_TRIDC3AG039280, gene_TRIDC3BG042570, gene_TRIDC3BG043390, gene_TRIDC4AG053870, gene_TRIDC4AG053890, gene_TRIDC4AG070340, gene_TRIDC4BG004950, gene_TRIDC5AG036450, gene_TRIDC5AG074050, gene_TRIDC5BG076390, gene_TRIDC6AG017290, gene_TRIDC6AG040710, gene_TRIDC6AG051960, gene_TRIDC6BG022980, gene_TRIDC6BG047710, gene_TRIDC6BG060540, gene_TRIDC7AG013900, gene_TRIDC7AG029410, gene_TRIDC7AG045430, gene_TRIDC7BG002250, gene_TRIDC7BG002260, gene_TRIDC7BG002300, gene_TRIDC7BG002310, gene_TRIDC7BG002320
Poaceae	Triticum aestivum	65	TraesCS1A02G146500.1.cds1, TraesCS1B02G165000.1.cds1 ... TraesCS1B02G175300.1, TraesCS1D02G142800.1, TraesCS2A02G417400.1, TraesCS2A02G479200.1, TraesCS2A02G554800.1.cds1, TraesCS2B02G503800.1, TraesCS2B02G515100.1, TraesCS2B02G614700.1.cds1, TraesCS2D02G414700.1, TraesCS2D02G487800.1, TraesCS2D02G510900.1, TraesCS2D02G584200.1.cds1, TraesCS3A02G137200.1, TraesCS3A02G263200.1, TraesCS3B02G077700.1.cds1, TraesCS3B02G206000.1, TraesCS3B02G284500.1, TraesCS3B02G289000.1, TraesCS3B02G441500.1, TraesCS3D02G104700.1.cds1, TraesCS3D02G138000.1, TraesCS3D02G182000.1, TraesCS3D02G402100.1, TraesCS4A02G281100.1.cds1, TraesCS4A02G481500.1, TraesCS4B02G029800.1, TraesCS4D02G027300.1, TraesCS5A02G229100.1, TraesCS5A02G520800.1.cds1, TraesCS5B02G204200.1, TraesCS5B02G563200.1.cds1, TraesCS5D02G212100.1, TraesCS5D02G212400.1, TraesCS5D02G238600.1, TraesCS5D02G255300.1, TraesCS6A02G127600.1.cds1, TraesCS6A02G128000.1.cds1, TraesCS6A02G324300.1.cds1, TraesCS6A02G344600.1, TraesCS6A02G344900.1, TraesCS6B02G155900.1, TraesCS6B02G156600.1.cds1, TraesCS6B02G156700.1.cds1, TraesCS6B02G159500.1, TraesCS6B02G292700.1, TraesCS6B02G377300.1, TraesCS6D02G117800.1.cds1, TraesCS6D02G327200.1, TraesCS7A02G014900.1, TraesCS7A02G069200.1, TraesCS7A02G229700.1, TraesCS7B02G015500.1, TraesCS7B02G015600.1, TraesCS7B02G195600.1, TraesCS7B02G257600.1, TraesCS7D02G011900.1.cds1, TraesCS7D02G063700.1, TraesCS7D02G114400.1, TraesCS7D02G114500.1.cds1, TraesCS7D02G114800.1, TraesCS7D02G115000.1.cds1, TraesCS7D02G230300.1.cds1, TraesCS7D02G230400.1
Poaceae	Zoysia japonica	1	nbis-gene-30839
Portulacaceae	Portulaca oleracea	1	evm.TU.LG25.17